Yes it will run, but at first and possibly even the whole drive to the dealer it may not want to idle at all. As long as there isnt a lot of stops on the way to the dealer it shouldnt be too bad.
I would suggest doing the airbox and breather mods. The instructions on how to do both of those is posted on the site, just look around a little. Definately, removed the snorkel in the frame going to the airbox, it is part of the instructions in installing the race kit. Do not remove the snorkel on the side of the frame on the left side if that is the one you are talking about.
Let me know if you need anymore help