ps don't worry about the pipe or kn.
do put the stock ecm in don't worry about a tps .
it will run fine without a tps reset.
if they do allot of buells they should know that is a r/r problem aka regulator.
it just gives you more ground if you have a video and say hey look at this.
ps the other stuff you did has nothing to do with this issue it's common failure with or without mods.