Really interested with this thread and the upgrades and personal choices.
Suspension: I've found the suspension to be pretty dang good (at my pace), once the spring and oil are right. Theres lots of adjustment range in the stock set up. I wonder if the BPF fork legs from the 1125/1190 could be made to fit? But if you go that far, theres brake options from using other brands of front end.
Brakes: You mean the Brembo P32? I have them both here, maybe I could weigh them? I doubt it would be enough to matter. I'm not much of a rear brake guy either, as in only in the dirt These do engine brake quite a bit so thats nice. If you aren't fading the front with the ZTL I am surprised! Maybe its the track? If you do get to fade, the easy upgrade should solve it. It's more pad area and Brembo has 2 different types of pads to pick from. I was still fading with the EPFA, and all that stopped (PUUUNNNN!) with the Brembos. The ZTL-2 is bigger, but I don't know if its heavier, the rest would be a wash.
Motor: There isn't much to do here either, IMO. Erik obsessed about them for many years so either stock with the muffler/ECM like you have or go full boat with a 1275 kit. Easy to do if you're comfortable splitting cases (I'd do the trans too). Not sure what HP there is to gain but I think theres dyno charts out there to look for.
Weight: This was Erik's whole thing. I don't think theres an extra ounce to be found, lol.
I LOVE the quick shifter on these. For your '08 it is as simple as adding a sensor on the linkage. I run a Dynojet 3-113 pull sensor. You can use a push sensor and swap the linkage for GP if you want. Either way, wire to the kickstand plug thats there, and simply turn on the shifter feature in the ECM with ECMDroid, ECMSpy, TunnerPro, etc. The timing is unadjustable, works well near redline, but it's not a modern-algorithm driven one, just a timer. Rev-Mo.com has interesting options I have tried that I really like as well. I have no idea how they'd do with race stress but I know they use one on their race bike.